table

Extract data from tabular file, includiong TSV and CSV files.

Parameters

Name	Type	Description
path	string	File to be transformed
rowSkip	int	Number of header rows to skip
columns	[]string	Manually set names of columns
extraColumns	string	Columns beyond originally declared columns will be placed in this array
sep	string	Separator \t for TSVs or , for CSVs

Example

params:
  gafFile:
    default: ../../source/go/goa_human.gaf.gz
    type: File

inputs:
  gafLoad:
    tableLoad:
      path: "{{params.gafFile}}"
      columns:
        - db
        - id
        - symbol
        - qualifier
        - goID
        - reference
        - evidenceCode
        - from
        - aspect
        - name
        - synonym
        - objectType
        - taxon
        - date
        - assignedBy
        - extension
        - geneProduct